3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02609

Details:

PFam ID : PF02609

PFam Domain Description : Exonuclease VII small subunit

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 975

Average sequence length: 52.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02609	Q4BV29_CROWT_13_65	34.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02609	C9RK70_FIBSS_8_64	100

Sequence based PCA Plot of the family - PF02609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay