3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02608

Details:

PFam ID : PF02608

PFam Domain Description : Basic membrane protein

Number of Sequence in 50% Dataset : 251

Number of Sequence in Full Dataset : 1258

Average sequence length: 288.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02608	C2SBH0_BACCE_2_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02608	Q98QL5_MYCPU_71_440	99.8

Sequence based PCA Plot of the family - PF02608 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=362 Length=8
Motif2 Start=176 Length=8
Motif3 Start=136 Length=8
Motif4 Start=3 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay