3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02604

Details:

PFam ID : PF02604

PFam Domain Description : Antitoxin Phd_YefM, type II toxin-antitoxin system

Number of Sequence in 50% Dataset : 439

Number of Sequence in Full Dataset : 1971

Average sequence length: 70.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02604	C2SBH0_BACCE_2_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02604	E8QYK4_ISOPI_7_98	99.6

Sequence based PCA Plot of the family - PF02604 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay