3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02603

Details:

PFam ID : PF02603

PFam Domain Description : HPr Serine kinase N terminus

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 409

Average sequence length: 126.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02603	C2SBH0_BACCE_2_49	80.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02603	A9G800_SORC5_29_171	100

Sequence based PCA Plot of the family - PF02603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=121 Length=8
Motif3 Start=1 Length=8
Motif4 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay