3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02602

Details:

PFam ID : PF02602

PFam Domain Description : Uroporphyrinogen-III synthase HemD

Number of Sequence in 50% Dataset : 576

Number of Sequence in Full Dataset : 1618

Average sequence length: 221.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02602	A1DYP9_SALTI_1_130	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02602	D1BFI9_SANKS_35_318	100

Sequence based PCA Plot of the family - PF02602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=20
Motif2 Start=80 Length=8
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay