3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02601

Details:

PFam ID : PF02601

PFam Domain Description : Exonuclease VII, large subunit

Number of Sequence in 50% Dataset : 327

Number of Sequence in Full Dataset : 1533

Average sequence length: 242.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02601	D8I9T9_BRAP9_1_34	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02601	E5U0B4_ALCXX_156_255	100

Sequence based PCA Plot of the family - PF02601 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=36 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay