3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02600

Details:

PFam ID : PF02600

PFam Domain Description : Disulfide bond formation protein DsbB

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 696

Average sequence length: 149.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02600	D8I9T9_BRAP9_1_34	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02600	A7I3Q5_CAMHC_1_207	100

Sequence based PCA Plot of the family - PF02600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=20
Motif2 Start=6 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay