3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02599

Details:

PFam ID : PF02599

PFam Domain Description : Global regulator protein family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 411

Average sequence length: 53.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02599	D8I9T9_BRAP9_1_34	30.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02599	E8R6X2_ISOPI_166_213	98.7

Sequence based PCA Plot of the family - PF02599 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=48 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay