3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02597

Details:

PFam ID : PF02597

PFam Domain Description : ThiS family

Number of Sequence in 50% Dataset : 439

Number of Sequence in Full Dataset : 2458

Average sequence length: 73.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02597	B3T309_9ARCH_5_54	57.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02597	B3T309_9ARCH_5_54	99.5

Sequence based PCA Plot of the family - PF02597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay