3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02595

Details:

PFam ID : PF02595

PFam Domain Description : Glycerate kinase family

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 850

Average sequence length: 334.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02595	E1K4N5_9EURY_1_124	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02595	Q4E355_TRYCR_11_412	100

Sequence based PCA Plot of the family - PF02595 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=23 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay