3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02594

Details:

PFam ID : PF02594

PFam Domain Description : Uncharacterised ACR, YggU family COG1872

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 540

Average sequence length: 75.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02594	E1K4N5_9EURY_1_124	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02594	F0IYA7_ACIMA_17_102	100

Sequence based PCA Plot of the family - PF02594 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=44 Length=8
Motif3 Start=73 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay