3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02593

Details:

PFam ID : PF02593

PFam Domain Description : Thymidylate synthase

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 63

Average sequence length: 217.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02593	E1K4N5_9EURY_1_124	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02593	D3S3I3_FERPA_10_265	100

Sequence based PCA Plot of the family - PF02593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=220 Length=8
Motif3 Start=186 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay