3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02589

Details:

PFam ID : PF02589

PFam Domain Description : Uncharacterised ACR, YkgG family COG1556

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 1225

Average sequence length: 192.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02589	D1XTW0_9ACTO_14_231	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02589	A4J1M6_DESRM_66_295	99.9

Sequence based PCA Plot of the family - PF02589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=45 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay