3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02588

Details:

PFam ID : PF02588

PFam Domain Description : Uncharacterized BCR, YitT family COG1284

Number of Sequence in 50% Dataset : 356

Number of Sequence in Full Dataset : 3056

Average sequence length: 84.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02588	D1XTW0_9ACTO_14_231	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02588	D4VTX0_ENTFC_1_48	83

Sequence based PCA Plot of the family - PF02588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=17
Motif2 Start=70 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay