3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02585

Details:

PFam ID : PF02585

PFam Domain Description : GlcNAc-PI de-N-acetylase

Number of Sequence in 50% Dataset : 351

Number of Sequence in Full Dataset : 1634

Average sequence length: 136.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02585	D1XTW0_9ACTO_14_231	98

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02585	Q2MG73_MICEC_2_92	100

Sequence based PCA Plot of the family - PF02585 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=205 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay