3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02582

Details:

PFam ID : PF02582

PFam Domain Description : Uncharacterised ACR, YagE family COG1723

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 306

Average sequence length: 173.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02582	D8TW78_VOLCA_151_449	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02582	E6ZNP3_9BASI_210_447	100

Sequence based PCA Plot of the family - PF02582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=8
Motif2 Start=195 Length=8
Motif3 Start=174 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay