3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02580

Details:

PFam ID : PF02580

PFam Domain Description : D-Tyr-tRNA(Tyr) deacylase

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 1100

Average sequence length: 142.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02580	A7HN07_FERNB_10_61	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02580	E9B5C5_LEIME_29_211	100

Sequence based PCA Plot of the family - PF02580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=33 Length=8
Motif3 Start=69 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay