3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02579

Details:

PFam ID : PF02579

PFam Domain Description : Dinitrogenase iron-molybdenum cofactor

Number of Sequence in 50% Dataset : 335

Number of Sequence in Full Dataset : 1131

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02579	A7HN07_FERNB_10_61	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02579	E1JST2_DESFR_126_222	100

Sequence based PCA Plot of the family - PF02579 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=88 Length=8
Motif2 Start=69 Length=8
Motif3 Start=52 Length=11
Motif4 Start=8 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay