3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02578

Details:

PFam ID : PF02578

PFam Domain Description : Multi-copper polyphenol oxidoreductase laccase

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 1171

Average sequence length: 225.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02578	A5AZ38_VITVI_141_259	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02578	A5WFS1_PSYWF_47_361	100

Sequence based PCA Plot of the family - PF02578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=32
Motif2 Start=290 Length=8
Motif3 Start=111 Length=8
Motif4 Start=125 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay