3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02577

Details:

PFam ID : PF02577

PFam Domain Description : Bifunctional nuclease

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 457

Average sequence length: 135.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02577	A5AZ38_VITVI_141_259	77.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02577	A8JFB6_CHLRE_210_367	100

Sequence based PCA Plot of the family - PF02577 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay