3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02576

Details:

PFam ID : PF02576

PFam Domain Description : Uncharacterised BCR, YhbC family COG0779

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 1133

Average sequence length: 139.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02576	B0CAC1_ACAM1_1_107	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02576	E8V7H6_TERSS_11_191	100

Sequence based PCA Plot of the family - PF02576 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=130 Length=8
Motif2 Start=10 Length=8
Motif3 Start=37 Length=11
Motif4 Start=66 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay