3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02575

Details:

PFam ID : PF02575

PFam Domain Description : YbaB/EbfC DNA-binding family

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 1095

Average sequence length: 92.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02575	B0CAC1_ACAM1_1_107	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02575	C6WB79_ACTMD_1_102	100

Sequence based PCA Plot of the family - PF02575 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=53 Length=8
Motif2 Start=26 Length=8
Motif3 Start=44 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay