3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02572

Details:

PFam ID : PF02572

PFam Domain Description : ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 784

Average sequence length: 171.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02572	B0CAC1_ACAM1_1_107	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02572	B0R5X1_HALS3_30_225	100

Sequence based PCA Plot of the family - PF02572 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=136 Length=8
Motif3 Start=110 Length=11
Motif4 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay