3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02568

Details:

PFam ID : PF02568

PFam Domain Description : Thiamine biosynthesis protein (ThiI)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 577

Average sequence length: 183.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02568	D7Y495_ECOLX_1_46	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02568	E1RKE1_METP4_168_368	100

Sequence based PCA Plot of the family - PF02568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=85 Length=8
Motif2 Start=130 Length=11
Motif3 Start=102 Length=11
Motif4 Start=5 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay