3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02566

Details:

PFam ID : PF02566

PFam Domain Description : OsmC-like protein

Number of Sequence in 50% Dataset : 278

Number of Sequence in Full Dataset : 2366

Average sequence length: 100.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02566	D7Y495_ECOLX_1_46	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02566	C1N4R9_MICPC_77_199	99.9

Sequence based PCA Plot of the family - PF02566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay