3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02559

Details:

PFam ID : PF02559

PFam Domain Description : CarD-like/TRCF domain

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 1272

Average sequence length: 101.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02559	F0VHK9_NEOCA_358_568	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02559	B9PB28_POPTR_135_195	100

Sequence based PCA Plot of the family - PF02559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=26
Motif2 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay