3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02558

Details:

PFam ID : PF02558

PFam Domain Description : Ketopantoate reductase PanE/ApbA

Number of Sequence in 50% Dataset : 462

Number of Sequence in Full Dataset : 1606

Average sequence length: 148.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02558	F0VHK9_NEOCA_358_568	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02558	E2VWW9_MYCTU_1_100	99.8

Sequence based PCA Plot of the family - PF02558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=25
Motif2 Start=89 Length=8
Motif3 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay