3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02557

Details:

PFam ID : PF02557

PFam Domain Description : D-alanyl-D-alanine carboxypeptidase

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 725

Average sequence length: 130.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02557	B8GJH0_METPE_3_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02557	D9XBM4_STRVR_113_279	100

Sequence based PCA Plot of the family - PF02557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=8
Motif3 Start=87 Length=14
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay