3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02554

Details:

PFam ID : PF02554

PFam Domain Description : Carbon starvation protein CstA

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 849

Average sequence length: 285.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02554	B8GJH0_METPE_3_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02554	E1YA93_9DELT_1_403	100

Sequence based PCA Plot of the family - PF02554 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=81 Length=8
Motif2 Start=17 Length=8
Motif3 Start=67 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay