3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02552

Details:

PFam ID : PF02552

PFam Domain Description : CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 67

Average sequence length: 161.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02552	D8PBI3_9BACT_44_198	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02552	D3SNX7_THEAH_561_726	100

Sequence based PCA Plot of the family - PF02552 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=120 Length=8
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay