3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02550

Details:

PFam ID : PF02550

PFam Domain Description : Acetyl-CoA hydrolase/transferase N-terminal domain

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 711

Average sequence length: 188.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02550	D3R1J4_CLOB3_17_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02550	C9RRK3_FIBSS_14_227	99.8

Sequence based PCA Plot of the family - PF02550 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=103 Length=8
Motif3 Start=156 Length=8
Motif4 Start=203 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay