3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02548

Details:

PFam ID : PF02548

PFam Domain Description : Ketopantoate hydroxymethyltransferase

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 1033

Average sequence length: 253.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02548	D3R1J4_CLOB3_17_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02548	D9UQT7_9ACTO_66_329	100

Sequence based PCA Plot of the family - PF02548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=222 Length=8
Motif2 Start=242 Length=14
Motif3 Start=15 Length=11
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay