3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02547

Details:

PFam ID : PF02547

PFam Domain Description : Queuosine biosynthesis protein

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 1119

Average sequence length: 320.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02547	D3R1J4_CLOB3_17_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02547	E8R5Y4_ISOPI_2_375	100

Sequence based PCA Plot of the family - PF02547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=152 Length=8
Motif3 Start=3 Length=8
Motif4 Start=169 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay