3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02545

Details:

PFam ID : PF02545

PFam Domain Description : Maf-like protein

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 1824

Average sequence length: 187.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02545	D3R1J4_CLOB3_17_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02545	C2FYS9_9SPHI_8_61	100

Sequence based PCA Plot of the family - PF02545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=24
Motif2 Start=39 Length=8
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay