3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02544

Details:

PFam ID : PF02544

PFam Domain Description : 3-oxo-5-alpha-steroid 4-dehydrogenase

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 533

Average sequence length: 139.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02544	D3R1J4_CLOB3_17_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02544	B9Q3D4_TOXGO_152_263	99.6

Sequence based PCA Plot of the family - PF02544 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay