3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02543

Details:

PFam ID : PF02543

PFam Domain Description : Carbamoyltransferase

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 406

Average sequence length: 342.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02543	D3R1J4_CLOB3_17_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02543	E3SL39_9CAUD_116_530	100

Sequence based PCA Plot of the family - PF02543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=20
Motif2 Start=322 Length=14
Motif3 Start=403 Length=11
Motif4 Start=358 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay