3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02542

Details:

PFam ID : PF02542

PFam Domain Description : YgbB family

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 998

Average sequence length: 155.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02542	D3R1J4_CLOB3_17_208	70.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02542	D3R1J4_CLOB3_17_208	100

Sequence based PCA Plot of the family - PF02542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=8
Motif2 Start=127 Length=17
Motif3 Start=30 Length=8
Motif4 Start=163 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay