3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02540

Details:

PFam ID : PF02540

PFam Domain Description : NAD synthase

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 3140

Average sequence length: 173.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02540	C5CIN5_KOSOT_5_126	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02540	Q4WEK7_ASPFU_300_470	100

Sequence based PCA Plot of the family - PF02540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=24 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay