3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02538

Details:

PFam ID : PF02538

PFam Domain Description : Hydantoinase B/oxoprolinase

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 787

Average sequence length: 501.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02538	B7GAP9_PHATC_121_282	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02538	D5WXE0_BACT2_41_633	100

Sequence based PCA Plot of the family - PF02538 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=8
Motif2 Start=11 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay