3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02537

Details:

PFam ID : PF02537

PFam Domain Description : CrcB-like protein

Number of Sequence in 50% Dataset : 316

Number of Sequence in Full Dataset : 1678

Average sequence length: 112.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02537	B7GAP9_PHATC_121_282	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02537	B7GAP9_PHATC_121_282	100

Sequence based PCA Plot of the family - PF02537 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=17
Motif2 Start=2 Length=14
Motif3 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay