3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02536

Details:

PFam ID : PF02536

PFam Domain Description : mTERF

Number of Sequence in 50% Dataset : 302

Number of Sequence in Full Dataset : 782

Average sequence length: 182.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02536	F2CTT2_HORVD_254_347	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02536	Q9SU97_ARATH_99_300	99.6

Sequence based PCA Plot of the family - PF02536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=180 Length=11
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay