3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02535

Details:

PFam ID : PF02535

PFam Domain Description : ZIP Zinc transporter

Number of Sequence in 50% Dataset : 663

Number of Sequence in Full Dataset : 2657

Average sequence length: 229.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02535	D6RQZ6_COPC7_89_375	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02535	D7DT06_METV3_8_374	99.9

Sequence based PCA Plot of the family - PF02535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=308 Length=17
Motif2 Start=240 Length=8
Motif3 Start=214 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay