3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02534

Details:

PFam ID : PF02534

PFam Domain Description : Type IV secretory system Conjugative DNA transfer

Number of Sequence in 50% Dataset : 323

Number of Sequence in Full Dataset : 931

Average sequence length: 369.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02534	Q24NJ2_DESHY_19_287	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02534	E4ZCI9_NEIL0_1_73	100

Sequence based PCA Plot of the family - PF02534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=102 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay