3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02525

Details:

PFam ID : PF02525

PFam Domain Description : Flavodoxin domain

Number of Sequence in 50% Dataset : 343

Number of Sequence in Full Dataset : 2030

Average sequence length: 182.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02525	D8JAL2_HALJB_99_280	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02525	E4QTB3_MYCH1_1_108	99.9

Sequence based PCA Plot of the family - PF02525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay