3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02520

Details:

PFam ID : PF02520

PFam Domain Description : Domain of unknown function DUF148

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 119

Average sequence length: 109.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02520	O17974_CAEEL_48_161	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02520	Q7YTI8_CAEEL_68_186	100

Sequence based PCA Plot of the family - PF02520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay