3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02519

Details:

PFam ID : PF02519

PFam Domain Description : Auxin responsive protein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 684

Average sequence length: 96.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02519	B1L5I0_KORCO_3_164	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02519	D8RC11_SELML_7_133	100

Sequence based PCA Plot of the family - PF02519 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=17
Motif2 Start=108 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay