3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02517

Details:

PFam ID : PF02517

PFam Domain Description : CAAX protease self-immunity

Number of Sequence in 50% Dataset : 1551

Number of Sequence in Full Dataset : 3684

Average sequence length: 114.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02517	B1L5I0_KORCO_3_164	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02517	E0S106_BUTPB_10_209	98.5

Sequence based PCA Plot of the family - PF02517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=278 Length=11
Motif3 Start=233 Length=8
Motif4 Start=207 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay