3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02516

Details:

PFam ID : PF02516

PFam Domain Description : Oligosaccharyl transferase STT3 subunit

Number of Sequence in 50% Dataset : 164

Number of Sequence in Full Dataset : 443

Average sequence length: 520.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02516	E7LFK4_TRYCR_2_378	96.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02516	F2KQM9_ARCVE_18_819	100

Sequence based PCA Plot of the family - PF02516 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=63 Length=8
Motif3 Start=197 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay