3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02515

Details:

PFam ID : PF02515

PFam Domain Description : CoA-transferase family III

Number of Sequence in 50% Dataset : 361

Number of Sequence in Full Dataset : 3170

Average sequence length: 184.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02515	C5L063_9ALVE_459_622	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02515	Q2W9E9_MAGSA_14_132	100

Sequence based PCA Plot of the family - PF02515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=58 Length=8
Motif2 Start=68 Length=11
Motif3 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay