3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02514

Details:

PFam ID : PF02514

PFam Domain Description : CobN/Magnesium Chelatase

Number of Sequence in 50% Dataset : 191

Number of Sequence in Full Dataset : 841

Average sequence length: 823.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02514	SPIN3_PONAB_50_77	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02514	Q82WD3_NITEU_142_278	100

Sequence based PCA Plot of the family - PF02514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=873 Length=11
Motif3 Start=572 Length=8
Motif4 Start=95 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay